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4:88903853 C / T


Filter Status
PASS
dbSNP
rs1126616
Allele Frequency
0.3182
Filtering AF
0.6969 (East Asian)
Allele Count
38620 / 121378
UCSC
4-88903853-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 18312 66732 2591 0.2744
East Asian 6145 8634 2175 0.7117
Other 308 908 59 0.3392
African 1820 10406 152 0.1749
Latino 4591 11576 896 0.3966
South Asian 5577 16510 992 0.3378
European (Finnish) 1867 6612 259 0.2824
Total 38620 121378 7124 0.3182

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.