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4:89052323 G / T


Filter Status
PASS
dbSNP
rs2231142
Allele Frequency
0.118
Filtering AF
0.291 (East Asian)
Allele Count
14323 / 121364
UCSC
4-89052323-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6615 66724 327 0.09914
East Asian 2599 8644 386 0.3007
Other 58 908 0 0.06388
African 285 10402 3 0.0274
Latino 2783 11564 368 0.2407
South Asian 1499 16508 78 0.0908
European (Finnish) 484 6614 19 0.07318
Total 14323 121364 1181 0.118

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.