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4:89421086 A / G


Filter Status
PASS
dbSNP
rs10516809
Allele Frequency
0.07627
Filtering AF
0.09289 (European (Non-Finnish))
Allele Count
9227 / 120984
UCSC
4-89421086-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6318 66612 338 0.09485
East Asian 7 8638 0 0.0008104
Other 76 904 6 0.08407
African 143 10168 2 0.01406
Latino 621 11570 18 0.05367
South Asian 1032 16482 47 0.06261
European (Finnish) 1030 6610 76 0.1558
Total 9227 120984 487 0.07627

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.