Variant: 5:101726770 T / C

Filter Status: PASS
dbSNP: rs10073892
Allele Frequency: 0.2426
Filtering AF: 0.2963 (European (Non-Finnish))
Allele Count: 29384 / 121114
UCSC: 5-101726770-T-C
ClinVar: Click to search for variant in Clinvar

Genotype Quality Metrics

Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Site Quality Metrics

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

non coding transcript exon

SLCO6A1 - ENST00000514765

intron

SLCO6A1

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Population Frequencies

Population	Allele Count	Allele Number	Number of Homozygotes	Allele Frequency
European (Non-Finnish)	19981	66648	3064	0.2998
East Asian	1101	8550	69	0.1288
Other	271	906	39	0.2991
African	489	10402	21	0.04701
Latino	1866	11512	160	0.1621
South Asian	2979	16490	265	0.1807
European (Finnish)	2697	6606	557	0.4083
Total	29384	121114	4175	0.2426

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.