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5:112154969 C / T


Filter Status
PASS
dbSNP
rs137854567
Allele Frequency
0.0008685
Filtering AF
0.001127 (European (Non-Finnish))
Allele Count
105 / 120892
UCSC
5-112154969-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 90 66486 1 0.001354
East Asian 0 8572 0 0
Other 1 902 0 0.001109
African 1 10374 0 9.639e-05
Latino 0 11488 0 0
South Asian 0 16498 0 0
European (Finnish) 13 6572 0 0.001978
Total 105 120892 1 0.0008685

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.