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5:112174096 C / T


Filter Status
PASS
dbSNP
rs137854575
Allele Frequency
0.0005122
Filtering AF
0.000598 (European (Non-Finnish))
Allele Count
62 / 121044
UCSC
5-112174096-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 51 66634 0 0.0007654
East Asian 0 8614 0 0
Other 1 904 0 0.001106
African 3 10254 0 0.0002926
Latino 2 11534 0 0.0001734
South Asian 4 16502 0 0.0002424
European (Finnish) 1 6602 0 0.0001515
Total 62 121044 0 0.0005122

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.