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5:125928355 C / T


Filter Status
PASS
dbSNP
rs199497486
Allele Frequency
8.251e-06
Filtering AF
0 (None)
Allele Count
1 / 121204
UCSC
5-125928355-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 66616 0 0
East Asian 0 8644 0 0
Other 0 906 0 0
African 0 10386 0 0
Latino 0 11550 0 0
South Asian 1 16490 0 6.064e-05
European (Finnish) 0 6612 0 0
Total 1 121204 0 8.251e-06

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.