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5:131662989 C / T


Warning! This variant is only covered in 34422 individuals (adjusted allele number = 68844).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs11568503
Allele Frequency
0.0001162
Filtering AF
0.000479 (African)
Allele Count
8 / 68844
UCSC
5-131662989-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 2 genes:

stop gained non coding transcript exon
intron
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 34772 0 2.876e-05
East Asian 0 4392 0 0
Other 0 620 0 0
African 7 6856 0 0.001021
Latino 0 5752 0 0
South Asian 0 11938 0 0
European (Finnish) 0 4514 0 0
Total 8 68844 0 0.0001162

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.