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5:131676320 C / T

Warning! This variant is found in phase with 5-131676322-C-A in 1 individuals, altering its functional interpretation
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Filter Status
PASS
dbSNP
rs1050152
Allele Frequency
0.2913
Filtering AF
0.4158 (European (Non-Finnish))
Allele Count
35363 / 121408
UCSC
5-131676320-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 28024 66740 5887 0.4199
East Asian 18 8654 0 0.00208
Other 294 908 49 0.3238
African 761 10406 38 0.07313
Latino 2286 11576 266 0.1975
South Asian 1899 16512 126 0.115
European (Finnish) 2081 6612 327 0.3147
Total 35363 121408 6693 0.2913

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.