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5:131721204 T / C


Filter Status
PASS
dbSNP
rs274557
Allele Frequency
0.4399
Filtering AF
0.6268 (East Asian)
Allele Count
53094 / 120696
UCSC
5-131721204-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 26156 66354 5192 0.3942
East Asian 5522 8616 1739 0.6409
Other 428 904 105 0.4735
African 3699 10356 666 0.3572
Latino 3599 11462 562 0.314
South Asian 10380 16494 3298 0.6293
European (Finnish) 3310 6510 827 0.5084
Total 53094 120696 12389 0.4399

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.