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5:131729380 G / A


Filter Status
PASS
dbSNP
rs28383481
Allele Frequency
0.003262
Filtering AF
0.004597 (Latino)
Allele Count
396 / 121410
UCSC
5-131729380-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 278 66738 1 0.004166
East Asian 1 8654 0 0.0001156
Other 6 908 0 0.006608
African 10 10406 0 0.000961
Latino 66 11578 3 0.0057
South Asian 27 16512 0 0.001635
European (Finnish) 8 6614 0 0.00121
Total 396 121410 4 0.003262

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.