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5:149450132 T / C


Warning! This variant is only covered in 7460 individuals (adjusted allele number = 14920).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs10079250
Allele Frequency
0.1192
Filtering AF
0.3274 (East Asian)
Allele Count
1779 / 14920
UCSC
5-149450132-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 609 7486 15 0.08135
East Asian 250 686 38 0.3644
Other 21 144 1 0.1458
African 316 2756 20 0.1147
Latino 54 388 4 0.1392
South Asian 520 3148 28 0.1652
European (Finnish) 9 312 0 0.02885
Total 1779 14920 106 0.1192

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.