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5:150227998 C / T


Warning! This variant is only covered in 10000 individuals (adjusted allele number = 20000).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs10065172
Allele Frequency
0.1913
Filtering AF
0.4175 (African)
Allele Count
3826 / 20000
UCSC
5-150227998-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 945 8496 71 0.1112
East Asian 289 796 61 0.3631
Other 34 190 2 0.1789
African 952 2160 213 0.4407
Latino 56 410 7 0.1366
South Asian 1550 7912 162 0.1959
European (Finnish) 0 36 0 0
Total 3826 20000 516 0.1913

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.