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5:151202476 C / T


Filter Status
PASS
dbSNP
rs116474260
Allele Frequency
0.01004
Filtering AF
0.01417 (European (Non-Finnish))
Allele Count
1214 / 120940
UCSC
5-151202476-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 994 66536 6 0.01494
East Asian 0 8624 0 0
Other 11 902 0 0.0122
African 30 10396 0 0.002886
Latino 53 11528 0 0.004598
South Asian 91 16360 1 0.005562
European (Finnish) 35 6594 0 0.005308
Total 1214 120940 7 0.01004

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.