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5:172662026 C / G


Filter Status
PASS
dbSNP
rs104893904
Allele Frequency
0.000805
Filtering AF
0.001188 (European (Non-Finnish))
Allele Count
92 / 114290
UCSC
5-172662026-C-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 89 62334 1 0.001428
East Asian 0 8486 0 0
Other 0 842 0 0
African 0 8862 0 0
Latino 3 11402 0 0.0002631
South Asian 0 16060 0 0
European (Finnish) 0 6304 0 0
Total 92 114290 1 0.000805

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.