Interested in working on the development of this resource? Apply here.

5:52351413 G / A


Filter Status
PASS
dbSNP
rs1062535
Allele Frequency
0.3847
Filtering AF
0.4471 (Latino)
Allele Count
46623 / 121184
UCSC
5-52351413-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 26526 66672 5210 0.3979
East Asian 2590 8600 400 0.3012
Other 357 908 68 0.3932
African 3271 10406 508 0.3143
Latino 5254 11486 1208 0.4574
South Asian 5990 16504 1097 0.3629
European (Finnish) 2635 6608 508 0.3988
Total 46623 121184 8999 0.3847

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.