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5:52358757 G / A


Filter Status
PASS
dbSNP
rs1801106
Allele Frequency
0.08901
Filtering AF
0.1796 (African)
Allele Count
10566 / 118706
UCSC
5-52358757-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5995 65310 292 0.09179
East Asian 172 8108 2 0.02121
Other 84 898 6 0.09354
African 1908 10226 167 0.1866
Latino 655 11276 26 0.05809
South Asian 1400 16368 88 0.08553
European (Finnish) 352 6520 8 0.05399
Total 10566 118706 589 0.08901

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.