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5:54466544 A / G


Filter Status
PASS
dbSNP
rs10061133
Allele Frequency
0.1111
Filtering AF
0.25 (East Asian)
Allele Count
13122 / 118156
UCSC
5-54466544-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 12 transcripts in 5 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6894 64856 401 0.1063
East Asian 2205 8512 268 0.259
Other 119 902 8 0.1319
African 474 9982 16 0.04749
Latino 524 11248 15 0.04659
South Asian 2152 16142 167 0.1333
European (Finnish) 754 6514 40 0.1158
Total 13122 118156 915 0.1111

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.