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5:56177443 G / A


Filter Status
PASS
dbSNP
rs702689
Allele Frequency
0.5984
Filtering AF
0.7052 (European (Non-Finnish))
Allele Count
72190 / 120648
UCSC
5-56177443-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 47392 66698 16790 0.7105
East Asian 1779 8612 196 0.2066
Other 556 900 165 0.6178
African 4779 9798 1148 0.4878
Latino 4584 11528 967 0.3976
South Asian 8340 16510 2174 0.5051
European (Finnish) 4760 6602 1712 0.721
Total 72190 120648 23152 0.5984

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.