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5:56178111 A / G


Filter Status
PASS
dbSNP
rs3822625
Allele Frequency
0.07206
Filtering AF
0.101 (East Asian)
Allele Count
8686 / 120538
UCSC
5-56178111-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4470 66656 141 0.06706
East Asian 918 8598 53 0.1068
Other 58 898 2 0.06459
African 1025 9762 52 0.105
Latino 870 11518 35 0.07553
South Asian 841 16500 33 0.05097
European (Finnish) 504 6606 19 0.07629
Total 8686 120538 335 0.07206

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.