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5:73985215 A / G


Filter Status
PASS
dbSNP
rs11556045
Allele Frequency
0.1988
Filtering AF
0.2574 (African)
Allele Count
24132 / 121374
UCSC
5-73985215-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

missense 5' UTR
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11658 66734 1053 0.1747
East Asian 1365 8644 117 0.1579
Other 178 908 14 0.196
African 2762 10398 383 0.2656
Latino 3013 11570 421 0.2604
South Asian 4056 16508 532 0.2457
European (Finnish) 1100 6612 95 0.1664
Total 24132 121374 2615 0.1988

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.