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5:7885959 A / G


Filter Status
PASS
dbSNP
rs162036
Allele Frequency
0.1711
Filtering AF
0.3792 (African)
Allele Count
20754 / 121316
UCSC
5-7885959-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7691 66670 474 0.1154
East Asian 1566 8650 142 0.181
Other 115 904 13 0.1272
African 4047 10398 785 0.3892
Latino 4395 11570 884 0.3799
South Asian 2428 16510 192 0.1471
European (Finnish) 512 6614 24 0.07741
Total 20754 121316 2514 0.1711

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.