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5:96139250 C / G

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs26653
Allele Frequency
0.6387
Filtering AF
0.7055 (European (Non-Finnish))
Allele Count
77488 / 121328
UCSC
5-96139250-C-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 7 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 47429 66720 16914 0.7109
East Asian 3913 8632 883 0.4533
Other 571 908 186 0.6289
African 5409 10384 1379 0.5209
Latino 6418 11566 1810 0.5549
South Asian 9003 16508 2488 0.5454
European (Finnish) 4745 6610 1700 0.7179
Total 77488 121328 25360 0.6387

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.