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6:18130918 T / C


Filter Status
PASS
dbSNP
rs1142345
Allele Frequency
0.03669
Filtering AF
0.05038 (African)
Allele Count
4435 / 120882
UCSC
6-18130918-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2671 66576 67 0.04012
East Asian 114 8640 0 0.01319
Other 29 900 1 0.03222
African 547 10106 18 0.05413
Latino 555 11546 17 0.04807
South Asian 295 16502 4 0.01788
European (Finnish) 224 6612 3 0.03388
Total 4435 120882 110 0.03669

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.