Variant: 6:29910557 T / A

Filter Status: PASS
dbSNP: rs75867621
Allele Frequency: 0.09123
Filtering AF: 0.1499 (East Asian)
Allele Count: 9991 / 109520
UCSC: 6-29910557-T-A
ClinVar: Click to search for variant in Clinvar

Genotype Quality Metrics

Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Site Quality Metrics

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 2 genes:

missense

HLA-A

non coding transcript exon

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Population Frequencies

Population	Allele Count	Allele Number	Number of Homozygotes	Allele Frequency
European (Non-Finnish)	4219	60198	86	0.07009
East Asian	1260	8020	23	0.1571
Other	65	814	1	0.07985
African	976	8170	22	0.1195
Latino	1244	10372	40	0.1199
South Asian	1950	15822	23	0.1232
European (Finnish)	277	6124	4	0.04523
Total	9991	109520	199	0.09123

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.