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6:29911207 G / A


Filter Status
VQSRTrancheSNP99.80to99.90
dbSNP
rs111965878
Allele Frequency
0.3068
Filtering AF
0.3846 (Latino)
Allele Count
34768 / 113332
UCSC
6-29911207-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 19813 61482 2372 0.3223
East Asian 2292 8392 169 0.2731
Other 220 830 22 0.2651
African 2291 8812 180 0.26
Latino 4433 11242 503 0.3943
South Asian 3484 16270 275 0.2141
European (Finnish) 2235 6304 308 0.3545
Total 34768 113332 3829 0.3068

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.