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6:29912087 G / T

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
VQSRTrancheINDEL99.50to99.90
dbSNP
rs1059632
Allele Frequency
0.1862
Filtering AF
0.3139 (African)
Allele Count
21454 / 115250
UCSC
6-29912087-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 9985 62754 86 0.1591
East Asian 1721 8434 90 0.2041
Other 157 864 1 0.1817
African 3023 9344 85 0.3235
Latino 2626 11276 66 0.2329
South Asian 3360 16134 77 0.2083
European (Finnish) 582 6444 5 0.09032
Total 21454 115250 410 0.1862

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.