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6:29912852 T / C


Filter Status
VQSRTrancheSNP99.60to99.80
dbSNP
rs1137296
Allele Frequency
0.6564
Filtering AF
0.7994 (Latino)
Allele Count
78236 / 119198
UCSC
6-29912852-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 41204 65286 12755 0.6311
East Asian 5974 8630 2044 0.6922
Other 568 902 182 0.6297
African 6887 9734 2291 0.7075
Latino 9400 11560 3860 0.8131
South Asian 10216 16486 3139 0.6197
European (Finnish) 3987 6600 1199 0.6041
Total 78236 119198 25470 0.6564

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.