Interested in working on the development of this resource? Apply here.

6:30865204 A / C

Note: This variant is found in phase with 6-30865203-C-G in 1 individuals.

Filter Status
PASS
dbSNP
rs2267641
Allele Frequency
0.23
Filtering AF
0.4 (Latino)
Allele Count
27899 / 121282
UCSC
6-30865204-A-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 20 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 10864 66662 892 0.163
East Asian 2917 8628 508 0.3381
Other 182 908 15 0.2004
African 1352 10402 86 0.13
Latino 4742 11572 1038 0.4098
South Asian 6391 16510 1346 0.3871
European (Finnish) 1451 6600 173 0.2198
Total 27899 121282 4058 0.23

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.