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6:31129707 C / T


Filter Status
PASS
dbSNP
rs115538919
Allele Frequency
0.09895
Filtering AF
0.1606 (Latino)
Allele Count
11384 / 115044
UCSC
6-31129707-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 38 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5753 62984 247 0.09134
East Asian 402 8444 10 0.04761
Other 111 860 7 0.1291
African 506 8496 13 0.05956
Latino 1908 11436 155 0.1668
South Asian 1526 16228 84 0.09404
European (Finnish) 1178 6596 115 0.1786
Total 11384 115044 631 0.09895

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.