Interested in working on the development of this resource? Apply here.

6:31236862 C / T


Filter Status
PASS
dbSNP
rs1049724
Allele Frequency
0.04045
Filtering AF
0.08092 (African)
Allele Count
4593 / 113538
UCSC
6-31236862-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2966 62090 79 0.04777
East Asian 28 8148 0 0.003436
Other 43 856 2 0.05023
African 767 8922 39 0.08597
Latino 304 11098 1 0.02739
South Asian 165 15878 5 0.01039
European (Finnish) 320 6546 5 0.04888
Total 4593 113538 131 0.04045

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.