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6:31236900 G / A


Filter Status
PASS
dbSNP
rs112426044
Allele Frequency
0.1004
Filtering AF
0.1332 (Latino)
Allele Count
11645 / 116016
UCSC
6-31236900-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7457 63264 462 0.1179
East Asian 831 8506 44 0.0977
Other 70 870 5 0.08046
African 718 9142 27 0.07854
Latino 1585 11414 103 0.1389
South Asian 609 16212 15 0.03756
European (Finnish) 375 6608 10 0.05675
Total 11645 116016 666 0.1004

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.