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6:31237779 C / T


Filter Status
PASS
dbSNP
rs146911342
Allele Frequency
0.1174
Filtering AF
0.1832 (African)
Allele Count
13542 / 115324
UCSC
6-31237779-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6661 64290 324 0.1036
East Asian 417 8544 12 0.04881
Other 112 842 6 0.133
African 1826 9588 181 0.1904
Latino 2092 11300 147 0.1851
South Asian 1317 14294 81 0.09214
European (Finnish) 1117 6466 97 0.1727
Total 13542 115324 848 0.1174

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.