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6:31238135 G / A


Filter Status
PASS
dbSNP
rs1050317
Allele Frequency
0.6908
Filtering AF
0.7725 (African)
Allele Count
79881 / 115634
UCSC
6-31238135-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 41057 63112 13369 0.6505
East Asian 6278 8276 2441 0.7586
Other 630 872 226 0.7225
African 7602 9656 3023 0.7873
Latino 7846 11092 2772 0.7074
South Asian 12067 16272 4557 0.7416
European (Finnish) 4401 6354 1522 0.6926
Total 79881 115634 27910 0.6908

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.