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6:31238147 C / G

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
VQSRTrancheSNP99.60to99.80
dbSNP
rs144499408
Allele Frequency
0.3524
Filtering AF
0.458 (South Asian)
Allele Count
41193 / 116900
UCSC
6-31238147-C-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 22847 63942 3855 0.3573
East Asian 1840 8448 207 0.2178
Other 344 884 74 0.3891
African 3441 9504 628 0.3621
Latino 3591 11366 554 0.3159
South Asian 7575 16228 1798 0.4668
European (Finnish) 1555 6528 162 0.2382
Total 41193 116900 7278 0.3524

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.