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6:31238234 G / A


Filter Status
PASS
dbSNP
rs79946831
Allele Frequency
0.727
Filtering AF
0.7895 (African)
Allele Count
87287 / 120068
UCSC
6-31238234-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 45882 65992 15951 0.6953
East Asian 6912 8618 2790 0.802
Other 676 900 248 0.7511
African 8107 10082 3261 0.8041
Latino 8602 11486 3219 0.7489
South Asian 12327 16406 4656 0.7514
European (Finnish) 4781 6584 1737 0.7262
Total 87287 120068 31862 0.727

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.