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6:31238495 G / A


Warning! This variant is only covered in 7558 individuals (adjusted allele number = 15116).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs17884390
Allele Frequency
0.03857
Filtering AF
0.08101 (African)
Allele Count
583 / 15116
UCSC
6-31238495-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 180 5348 2 0.03366
East Asian 1 536 0 0.001866
Other 8 160 0 0.05
African 98 1016 7 0.09646
Latino 18 332 0 0.05422
South Asian 278 7686 8 0.03617
European (Finnish) 0 38 0 0
Total 583 15116 17 0.03857

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.