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6:31239082 G / C

Note: This variant is found in phase with 6-31239084-G-A in 1 individuals.

Filter Status
PASS
dbSNP
rs78019324
Allele Frequency
0.1398
Filtering AF
0.2114 (African)
Allele Count
15699 / 112332
UCSC
6-31239082-G-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 2 genes:

missense synonymous
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7428 60798 72 0.1222
East Asian 621 8210 16 0.07564
Other 137 836 0 0.1639
African 1957 8916 69 0.2195
Latino 2173 11096 76 0.1958
South Asian 2326 16152 25 0.144
European (Finnish) 1057 6324 6 0.1671
Total 15699 112332 264 0.1398

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.