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6:31239335 G / A


Filter Status
PASS
dbSNP
rs17880655
Allele Frequency
0.1923
Filtering AF
0.4365 (East Asian)
Allele Count
22152 / 115168
UCSC
6-31239335-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11607 63362 1156 0.1832
East Asian 3704 8258 828 0.4485
Other 133 844 20 0.1576
African 901 9096 40 0.09905
Latino 2343 11258 239 0.2081
South Asian 1696 16094 100 0.1054
European (Finnish) 1768 6256 224 0.2826
Total 22152 115168 2607 0.1923

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.