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6:31322911 C / T


Filter Status
PASS
dbSNP
rs1051488
Allele Frequency
0.4427
Filtering AF
0.585 (African)
Allele Count
53289 / 120362
UCSC
6-31322911-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 2 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 24821 66104 4759 0.3755
East Asian 4647 8580 1201 0.5416
Other 447 900 118 0.4967
African 6090 10192 1797 0.5975
Latino 5511 11538 1284 0.4776
South Asian 8759 16452 2314 0.5324
European (Finnish) 3014 6596 676 0.4569
Total 53289 120362 12149 0.4427

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.