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6:31324195 T / A

Note: This variant is found in phase with 6-31324194-G-A in 164 individuals.
Note: This variant is multiallelic! The other alt alleles are:

Warning! This variant is only covered in 44495 individuals (adjusted allele number = 88990).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs151341218;rs151341219;rs151341220
Allele Frequency
0.003753
Filtering AF
0.004334 (East Asian)
Allele Count
334 / 88990
UCSC
6-31324195-T-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 199 50826 5 0.003915
East Asian 39 6766 4 0.005764
Other 3 602 0 0.004983
African 10 5882 0 0.0017
Latino 15 9074 0 0.001653
South Asian 32 10722 7 0.002985
European (Finnish) 36 5118 2 0.007034
Total 334 88990 18 0.003753

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.