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6:31324506 C / T


Filter Status
PASS
dbSNP
rs1050388
Allele Frequency
0.2213
Filtering AF
0.2865 (South Asian)
Allele Count
21522 / 97250
UCSC
6-31324506-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11470 53466 1329 0.2145
East Asian 1422 6776 98 0.2099
Other 176 710 26 0.2479
African 2020 7800 268 0.259
Latino 1678 10046 108 0.167
South Asian 3798 12904 564 0.2943
European (Finnish) 958 5548 61 0.1727
Total 21522 97250 2454 0.2213

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.