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6:31431780 T / G


Filter Status
PASS
dbSNP
rs2395029
Allele Frequency
0.02826
Filtering AF
0.05968 (South Asian)
Allele Count
3311 / 117162
UCSC
6-31431780-T-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2169 65596 49 0.03307
East Asian 36 8612 1 0.00418
Other 12 868 0 0.01382
African 83 10340 1 0.008027
Latino 91 11472 5 0.007932
South Asian 863 13660 35 0.06318
European (Finnish) 57 6614 0 0.008618
Total 3311 117162 91 0.02826

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.