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6:31540784 C / A


Filter Status
PASS
dbSNP
rs1041981
Allele Frequency
0.3496
Filtering AF
0.492 (African)
Allele Count
40788 / 116668
UCSC
6-31540784-C-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 21337 63792 3589 0.3345
East Asian 4097 8478 980 0.4833
Other 263 872 32 0.3016
African 4739 9404 1145 0.5039
Latino 3828 11394 607 0.336
South Asian 4636 16234 707 0.2856
European (Finnish) 1888 6494 275 0.2907
Total 40788 116668 7335 0.3496

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.