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6:31914180 G / A


Filter Status
PASS
dbSNP
rs641153
Allele Frequency
0.09834
Filtering AF
0.1821 (African)
Allele Count
11428 / 116212
UCSC
6-31914180-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 26 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5420 63326 240 0.08559
East Asian 543 8516 29 0.06376
Other 87 872 3 0.09977
African 1737 9164 159 0.1895
Latino 727 11460 25 0.06344
South Asian 2507 16264 221 0.1541
European (Finnish) 407 6610 16 0.06157
Total 11428 116212 693 0.09834

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.