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6:39016636 C / T


Warning! This variant is only covered in 15521 individuals (adjusted allele number = 31042).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs10305420
Allele Frequency
0.4573
Filtering AF
0.5399 (European (Non-Finnish))
Allele Count
14194 / 31042
UCSC
6-39016636-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 9837 17918 1944 0.549
East Asian 453 1318 32 0.3437
Other 97 212 20 0.4575
African 155 688 9 0.2253
Latino 1407 3008 192 0.4678
South Asian 1820 7150 207 0.2545
European (Finnish) 425 748 85 0.5682
Total 14194 31042 2489 0.4573

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.