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6:65767506 C / T


Warning! This variant is only covered in 10857 individuals (adjusted allele number = 21714).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs199740930
Allele Frequency
0.001151
Filtering AF
0.001701 (European (Non-Finnish))
Allele Count
25 / 21714
UCSC
6-65767506-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 22 8752 0 0.002514
East Asian 0 622 0 0
Other 1 242 0 0.004132
African 0 2150 0 0
Latino 0 410 0 0
South Asian 2 7914 0 0.0002527
European (Finnish) 0 1624 0 0
Total 25 21714 0 0.001151

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.