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6:89926962 T / C


Filter Status
PASS
dbSNP
rs1186902
Allele Frequency
0.2611
Filtering AF
0.3886 (Latino)
Allele Count
31666 / 121286
UCSC
6-89926962-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 17347 66684 2229 0.2601
East Asian 2335 8644 315 0.2701
Other 274 908 45 0.3018
African 1077 10402 58 0.1035
Latino 4599 11548 958 0.3983
South Asian 4670 16496 693 0.2831
European (Finnish) 1364 6604 164 0.2065
Total 31666 121286 4462 0.2611

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.