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7:100226902 C / T


Filter Status
PASS
dbSNP
rs41303501
Allele Frequency
0.002038
Filtering AF
0.002677 (European (Non-Finnish))
Allele Count
247 / 121176
UCSC
7-100226902-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 13 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 201 66586 0 0.003019
East Asian 0 8624 0 0
Other 0 906 0 0
African 7 10372 0 0.0006749
Latino 1 11568 0 8.645e-05
South Asian 9 16510 0 0.0005451
European (Finnish) 29 6610 0 0.004387
Total 247 121176 0 0.002038

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.