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7:117199644 ATCT / A

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs113993960
Allele Frequency
0.006785
Filtering AF
0.009956 (European (Non-Finnish))
Allele Count
823 / 121296
UCSC
7-117199644-ATCT-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 707 66676 0 0.0106
East Asian 0 8646 0 0
Other 2 904 0 0.002212
African 21 10392 0 0.002021
Latino 39 11564 0 0.003373
South Asian 41 16508 0 0.002484
European (Finnish) 13 6606 0 0.001968
Total 823 121296 0 0.006785

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.